雑誌論文（全期間）
全期間の記録： 雑誌論文 国際会議議事録 書籍・事典・解説など
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“Suburban-urban differences in coarse and fine atmospheric particulate matter with key chemical compositions influencing bacterial communities in Toyama and Yokohama, Japan”
, Journal of Hazardous Materials
, 501
, 13 pages
[Journal]
（2026-01-01）
DOI: 10.1016/j.jhazmat.2025.140678
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“Causal Interactions Among Phytoplankton and Pseudo-Nitzschia Species Revealed by Empirical Dynamic Modelling”
, Science of the Total Environment
, 211
, 39 pages
[Journal/Preprint]
（2025-03-01）
Link
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“SSBD: an ecosystem for enhanced sharing and reuse of bioimaging data”
, Nucleic Acids Research
, 53(6)
, D1716–1723
[Journal]
（2024-10-31）
DOI: 10.1093/nar/gkae860
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“Segmentation of mouse brain slices with unsupervised domain adaptation considering cross-sectional locations”
, IPSJ Transactions on Bioinformatics
, 17
, 33–39
[Journal]
（2024-05-01）
DOI: 10.2197/ipsjtbio.17.33
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“Metabolic network analysis by time-series causal inference using the multi-dimensional space of prediction errors”
, IPSJ Transactions on Bioinformatics
, 16
, 13–19
[Journal]
（2023-04-03）
DOI: 10.2197/ipsjtbio.16.13
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“Gene deletion algorithms for minimum reaction network design by mixed-integer linear programming for metabolite production in constraint-based models: gDel_minRN”
, Journal of Computational Biology
, 30(5)
, 553–568
[Journal]
（2023-02-17）
DOI: 10.1089/cmb.2022.0352
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“NeuroGT: a brain atlas of neurogenic tagging CreER drivers for birthdate-based classification and manipulation of mouse neurons”
, Cell Reports Methods
, 1(3)
, 100012
[Journal]
（2021-05-26）
DOI: 10.1016/j.crmeth.2021.100012
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“BD5: An open HDF5-based data format to represent quantitative biological dynamics data”
, PLOS ONE
, 15(8)
, e0237468
[Journal]
（2020-08-12）
DOI: 10.1371/journal.pone.0237468
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“Phenotype analysis method for identification of gene functions involved in asymmetric division of Caenorhabditis elegans”
, Journal of Computational Biology
, 24(5)
, 436–446
[Journal]
（2017-05-01）
DOI: 10.1089/cmb.2016.0210
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“Nuclear detection in 4D microscope images of developing embryo using enhanced probability map of top-ranked intensity-ordered descriptors”
, IPSJ Transactions on Computer Vision and Application
, 8
, 8
[Journal]
（2016-11-03）
DOI: 10.1186/s41074-016-0010-3
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“SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena”
, Bioinformatics
, 32(22)
, 3471–3479
[Journal]
（2016-06-19）
DOI: 10.1093/bioinformatics/btw417
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“Investigation of glycan evolution based on a comprehensive analysis of glycosyltransferases using phylogenetic profiling”
, Biophysics and Physicobiology
, 12
, 57–68
[Journal]
（2015-11-12）
DOI: 10.2142/biophysico.12.0_57
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“Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data”
, Bioinformatics
, 31(7)
, 1044–1052
[Journal]
（2015-04-01）
DOI: 10.1093/bioinformatics/btu767
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“GenoBase: Comprehensive resource database of Escherichia coli K-12”
, Nucleic Acids Research
, 43(Database issue)
, D606–D617
[Journal]
（2015-01-28）
DOI: 10.1093/nar/gku1080
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“Biochemical studies on sphingolipids of Artemia franciscana: complex neutral glycosphingolipids”
, Glycoconjugate Journal
, 30(3)
, 257–268
[Journal]
（2013-04-30）
DOI: 10.1007/s10719-012-9436-8
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“Parameter optimization and sensitivity analysis for large kinetic models using a real-coded genetic algorithm”
, Genes (Genome Informatics 2012 Supplement)
, 518(1)
, 84–90
[Journal]
（2013-04-10）
DOI: 10.1016/j.gene.2012.11.080
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“An Enzyme Commission number predictor using mutual information and a support vector machine”
, Bioinformatics
, 29(3)
, 365–372
[Journal]
（2013-02-01）
DOI: 10.1093/bioinformatics/bts700
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“Intrinsically disordered proteins in human mitochondria”
, Genes to Cells
, 17(10)
, 817–825
[Journal]
（2012-08-22）
DOI: 10.1111/gtc.12000
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“Comparative proteomic analysis reveals differentially expressed proteins in Caenorhabditis elegans pgl-1 mutants grown at 20°C and 25°C”
, Journal of Proteomics
, 75(15)
, 4792–4801
[Journal]
（2012-08-03）
DOI: 10.1016/j.jprot.2012.04.038
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“Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli”
, Journal Bioinformatics and Computational Biology (Genome Informatics 2010)
, 8
, 1–17
[Journal]
（2010-09-10）
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“Reaction similarities focusing substructure changes of chemical compounds and metabolic pathway alignments”
, IPSJ Transactions on Bioinformatics
, 2
, 15–24
[Journal]
（2009-03-24）
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“Metabolic pathway alignment based on similarity between chemical structures”
, IPSJ Transactions on Bioinformatics
, 48(SIG17 (TBIO3))
, 9–18
[Journal]
（2007-07-09）
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“A method for species comparison of metabolic networks using reaction profile”
, IPSJ Transactions on Bioinformatics
, 47(SIG17 (TBIO1))
, 42–47
[Journal]
（2006-11-01）
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“An OGSA-based integration of life scientific resources for drug discovery”
, Methods of Information in Medicine
, 44(2)
, 257–261
[Journal]
（2005-06-01）
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“Heterogeneous database federation using grid technology for drug discovery process”
, Lecture Notes in Bioinformatics
, 3370
, 43–52
[Journal]
（2005-02-01）
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“An application of a pathway alignment method to the analysis of metabolic pathways”
, Research Communications in Biochemistry, Cell and Molecular Biology
, 5(3 & 4)
, 179–191
[Journal]
（2003-07-07）
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“パスウェイ解析のための情報量最大化アライメントアルゴリズム”
, 情報処理学会論文誌：数理モデル化と応用
, 41(SIG7(TOM3))
, 41–48
[Journal]
（2000-11-06）